The Journal of chemical physics
Tutorial on quantifying and sampling biomolecular ensembles with ShapeGMM.
Subarna Sasmal, Martin McCullagh, Glen M Hocky
Published: 202510.1063/5.0305455
Abstract
Here, we present a detailed workflow for clustering and enhanced sampling of biomolecular conformations using the ShapeGMM methodology. This approach fits a probabilistic model of biomolecular conformations rooted in the idea that the free energy can…
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